PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF076900030CFD_t1
Common NameTRAES_3BF076900030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 194aa    MW: 22594 Da    PI: 9.9726
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF076900030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.15.3e-227731671
                  E2F_TDP 16 lleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71
                             ++ek+e+ g++t+neva+e++se           d+kn+rRR+YD++NVL al++i+k ek+eirw+g
  TRAES3BF076900030CFD_t1  7 VCEKVEAkGRTTYNEVADEIYSElksmahigqgfDEKNIRRRVYDAFNVLIALRVIAK-EKKEIRWMG 73
                             89**9999**************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.31E-16274IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-17273IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-18373IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-31478IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.60E-2678177IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.91E-3280190No hitNo description
SMARTSM011381.0E-2480193IPR014889Transcription factor DP, C-terminal
PfamPF087817.8E-2481178IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLIAHYVCEK VEAKGRTTYN EVADEIYSEL KSMAHIGQGF DEKNIRRRVY DAFNVLIALR  60
VIAKEKKEIR WMGLSNYRYE KIKKLEEVRK ELTNKIRNKK ALLQEIEKQF DDLQNIKLRN  120
QTLESSAENV NGIRLPFVLV KTSRKARVEI EISDDSKFAH FEFNGAPFTL HDDLSILEGI  180
RRNSIGRAGR ATLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-237741989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2719170.0AJ271917.1 Triticum sp. mRNA for DP protein (dp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754350.11e-115PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY25e-54DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A077RTK41e-141A0A077RTK4_WHEAT; Uncharacterized protein
STRINGOB01G35630.11e-101(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-55Transcription factor DP
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]